Stroud logo


970 Spencer Road
Avondale, PA 19311
610.268.2153 / 610.268.0490 (fax)

dedicated to the study of streams and rivers


    Home | About Stroud | Research | Education | Press Room | Support Stroud | Contact Us | Directions

Biogeochemistry

Water is found in many places beyond stream channels throughout the watershed. Streamwater, groundwater, soil water, and water in sediments below the channel contain a rich array of organic carbon molecules important as food for microorganisms and as resources for other living things. This laboratory works on identifying the presence of these molecules and determining their role in the stream ecosystem.

Department listing

Dr. Louis A. Kaplan, Senior Research Scientist | Profile | Email

  • Xueju Lin, Postdoctoral Scientist | Profile | Email
  • Michael D. Gentile, Research Technician | Profile | Email
  • Sherman L. Roberts, Research Technician | Profile | Email
  • Sarah L. Smith, Research Technician | Profile | Email
  • Karen M. Hogan, Ph.D. candidate, University of Pennsylvania | Profile | Email
  • Chris McLaughlin, Ph.D. candidate, University of Pennsylvania | Profile | Email
  • David C. Richardson, Ph.D. candidate, University of Maryland | Profile | Email
Xueju Lin XUEJU LIN
Postdoctoral Scientist, 2006 to present

Education:
PhD in Marine and Atmospheric Sciences, Marine Science Research Center, Stony Brook University, 2006; MS in Environmental Microbiology, Environmental Sciences Research Center, Xiamen University, China, 2001; BS in Marine Biology, Department of Oceanography, Xiamen University, China, 1998

My research interests focus on microbial diversity, dynamics, functional roles, and carbon transformations in natural and man-made ecosystems. I employ a variety of molecular techniques, including cloning, sequencing, TRFLP, FISH and qPCR, and culture-dependent techniques to study microbial communities. My dissertation research involved microbial community assemblages across redox gradients in the anoxic Cariaco Basin (Venezuela). I used the redox transition zone as a model system to understand microbial spatiotemporal variations and interpret biogeochemical properties of bacterial guilds along a sequence of redox couples. Currently, I am studying the ecology of microbial biofilms in a drinking water distribution system and the efficacy of different biofilm control strategies.

E-mail: xlin@stroudcenter.org

 

Education:
BS in Chemistry, University of Delaware, 1996

Mike runs the analytical chemistry section of our laboratory including operation and maintenance of: Dionex ICS3000 for analyses of carbohydrates, organic acids, anions, cations, and nutrients; Sievers 900 and 800 analyzers for the measurements of dissolved organic carbon; OI 1010 TOC analyzer and Thermo-Finnigan DeltaPlus XP Isotope Ratio Mass Spectrometer (IRMS) for the measurement of 13C-DOC; Agilent 1100 series High Pressure Liquid Chromatograph (HPLC) for the measurement of amino acids. Mike also assists with field sampling, sample processing, and bioreactor operations. He speaks Spanish and has been the primary technician for studies in Costa Rica and Peru.

E-mail: mgentile@stroudcenter.org
Michael Gentile
MICHAEL D. GENTILE
Research Technician, 1997 to present

top

Sherman Roberts SHERMAN L. ROBERTS
Research Technician, 1972 to present

Education:
Graduated Upper Darby High School, 1971

Sherman is responsible for general laboratory operations and maintenance of our biofilm reactor room. He is skilled in sterile techniques for microbiology and bright field epifluorescence microscopy as well as logistical planning for research at the Center and in the field. Sherman assists in design, implementation and execution of laboratory and field experiments, field sampling, sample processing, operating analytical instruments and the supervision of interns.

E-mail: sroberts@stroudcenter.org

 

Education:
BA in Biology & minor in Environmental Science
Lafayette College, 2007

Sarah monitors how the microbial ecology of biofilm changes throughout the Philadelphia Water Department's drinking water distribution system. To do this, she maintains system models, collects water and biofilm samples, and performs molecular techniques like DNA extraction & purification, PCR, cloning, and plasmid isolation.

E-mail: ssmith@stroudcenter.org

Sarah Smith SARAH L. SMITH
Research Technician, May 2007 to present

top

Karen Hogan KAREN M. HOGAN
University of Pennsylvania
Department of Biology: Ecology and Evolutionary Biology Graduate Group
Ph.D. Candidate, 2002 to present

Education:
BS in Environmental Biology, University of Dayton, 2001

Stream bacterial communities occupy a central role in biogeochemical cycling and are a vital component of trophic food webs in lotic ecosystems. My research interests focus on understanding the spatiotemporal dynamics associated with stream bacterial communities and the factors that control these dynamics. In particular, my dissertation work addresses how bacterial communities respond to increased shear stress and nutrients that occur during scouring flows caused by storms and how these responses may vary in relation to the location of communities within the stream (ie. rocks versus sediments) and seasonality. I employ traditional microbial techniques, such as microscopic counts and culturing, as well as molecular techniques, such as clone library construction, sequencing, and terminal fragment length polymorphism (T-RFLP) in my research.


E-mail: rowley@sas.upenn.edu

 

Education:
BS in Environmental Science, Virginia Tech, 2001
MS in Biology, Arizona State University, 2003

DOC in surface water provides stream microbial heterotrophs with energy. However, low concentrations of nitrogen can limit heterotrophic metabolism. Both DOC and N in stream water are a product of natural and anthropogenic sources in the watershed and the supply is controlled by the movement of water through the adjacent terrestrial ecosystem. My research interests focus on biogeochemical cycling of C and N and the effects of anthropogenic disturbances on aquatic ecosystems. More specifically, the main objective of my dissertation work will be to describe how changes in water flow paths as a result of stream restoration affect the relationship between DOC and N dynamics.


E-mail: chmc@sas.upenn.edu
Chris McLaughlin CHRIS MCLAUGHLIN
University of Pennsylvania
Department of Biology: Ecology and Evolutionary Biology Graduate Group
Ph.D. Candidate, 2007 to present

top

David Richardson DAVID C. RICHARDSON
University of Maryland
Marine, Estuarine and Environmental Science Department
Ph.D. Candidate, 2002 to present

Education:
BS in Operations Research and Industrial Engineering, Cornell University, 2002

Seston is suspended particulate load in streams and consists of different types of small particles (<1mm) including bacterial and algal cells, leaf and wood pieces, fecal pellets, insect parts and soil particles. I am interested in how small suspended particles (seston) move downstream and how they interact physically and biologically with the stream ecosystem. Specifically, my dissertation work examines the seasonal and daily transport patterns of seston and identifies potential sources of seston. I would like to compare storm and baseflow transport dynamics of particles using models and empirical observations. I have also been developing a method to examine the bacterial respiration of seston carbon.



E-mail: drichar4@umd.edu
Website

Home | About Stroud | Research | Education | Support Stroud | Press Room
Leaf Pack Network | Directions | Calendar of Events | River Resources | Employment | Contact Us

Copyright ©2002-2008 Stroud Water Research Center