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Water is found in many places beyond stream channels throughout the watershed.
Streamwater, groundwater, soil water, and water in sediments below the channel
contain a rich array of organic carbon molecules important as food for
microorganisms and as resources for other living things. This laboratory works
on identifying the presence of these molecules and determining their role in the
stream ecosystem.
Department listing
Dr. Louis A. Kaplan, Senior Research Scientist |
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- Xueju Lin, Postdoctoral Scientist | Profile |
Email
- Michael D. Gentile, Research Technician | Profile
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- Sherman L. Roberts, Research Technician | Profile
| Email
- Sarah L. Smith, Research Technician | Profile |
Email
- Karen M. Hogan, Ph.D. candidate, University of Pennsylvania |
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- Chris McLaughlin, Ph.D. candidate, University of Pennsylvania |
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- David C. Richardson, Ph.D. candidate, University of Maryland |
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XUEJU LIN
Postdoctoral Scientist, 2006 to present
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Education:
PhD in Marine and Atmospheric Sciences, Marine Science Research Center, Stony
Brook University, 2006; MS in Environmental Microbiology, Environmental Sciences
Research Center, Xiamen University, China, 2001; BS in Marine Biology,
Department of Oceanography, Xiamen University, China, 1998
My research interests focus on microbial diversity, dynamics, functional roles,
and carbon transformations in natural and man-made ecosystems. I employ a
variety of molecular techniques, including cloning, sequencing, TRFLP, FISH and
qPCR, and culture-dependent techniques to study microbial communities. My
dissertation research involved microbial community assemblages across redox
gradients in the anoxic Cariaco Basin (Venezuela). I used the redox transition
zone as a model system to understand microbial spatiotemporal variations and
interpret biogeochemical properties of bacterial guilds along a sequence of
redox couples. Currently, I am studying the ecology of microbial biofilms in a
drinking water distribution system and the efficacy of different biofilm control
strategies.
E-mail:
xlin@stroudcenter.org |
Education: BS in Chemistry, University of Delaware, 1996
Mike runs the analytical chemistry section of our laboratory including operation
and maintenance of: Dionex ICS3000 for analyses of carbohydrates, organic acids,
anions, cations, and nutrients; Sievers 900 and 800 analyzers for the
measurements of dissolved organic carbon; OI 1010 TOC analyzer and Thermo-Finnigan
DeltaPlus XP Isotope Ratio Mass Spectrometer (IRMS) for the measurement of
13C-DOC; Agilent 1100 series High Pressure Liquid Chromatograph (HPLC) for the
measurement of amino acids. Mike also assists with field sampling, sample
processing, and bioreactor operations. He speaks Spanish and has been the
primary technician for studies in Costa Rica and Peru.
E-mail:
mgentile@stroudcenter.org |

MICHAEL D. GENTILE
Research Technician, 1997 to present
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SHERMAN L. ROBERTS
Research Technician, 1972 to present
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Education:
Graduated Upper Darby High School, 1971
Sherman is responsible for general
laboratory operations and maintenance of our biofilm reactor room. He is skilled
in sterile techniques for microbiology and bright field epifluorescence
microscopy as well as logistical planning for research at the Center and in the
field. Sherman assists in design, implementation and execution of laboratory and
field experiments, field sampling, sample processing, operating analytical
instruments and the supervision of interns.
E-mail:
sroberts@stroudcenter.org
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Education:
BA in Biology & minor in Environmental Science Lafayette College, 2007
Sarah monitors how the microbial ecology of biofilm changes throughout the
Philadelphia Water Department's drinking water distribution system. To do this,
she maintains system models, collects water and biofilm samples, and performs
molecular techniques like DNA extraction & purification, PCR, cloning, and
plasmid isolation.
E-mail:
ssmith@stroudcenter.org
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SARAH L. SMITH
Research Technician, May 2007 to present
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KAREN M. HOGAN
University of Pennsylvania Department of Biology: Ecology and Evolutionary
Biology Graduate Group Ph.D. Candidate, 2002 to present
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Education:
BS in Environmental Biology,
University of Dayton, 2001
Stream bacterial communities occupy a central role in biogeochemical cycling and
are a vital component of trophic food webs in lotic ecosystems. My research
interests focus on understanding the spatiotemporal dynamics associated with
stream bacterial communities and the factors that control these dynamics. In
particular, my dissertation work addresses how bacterial communities respond to
increased shear stress and nutrients that occur during scouring flows caused by
storms and how these responses may vary in relation to the location of
communities within the stream (ie. rocks versus sediments) and seasonality. I
employ traditional microbial techniques, such as microscopic counts and
culturing, as well as molecular techniques, such as clone library construction,
sequencing, and terminal fragment length polymorphism (T-RFLP) in my research.
E-mail:
rowley@sas.upenn.edu |
Education:
BS in Environmental Science, Virginia Tech, 2001
MS in Biology, Arizona State University, 2003
DOC in surface water provides stream microbial heterotrophs with energy.
However, low concentrations of nitrogen can limit heterotrophic metabolism. Both
DOC and N in stream water are a product of natural and anthropogenic sources in
the watershed and the supply is controlled by the movement of water through the
adjacent terrestrial ecosystem. My research interests focus on biogeochemical
cycling of C and N and the effects of anthropogenic disturbances on aquatic
ecosystems. More specifically, the main objective of my dissertation work will
be to describe how changes in water flow paths as a result of stream restoration
affect the relationship between DOC and N dynamics.
E-mail:
chmc@sas.upenn.edu
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CHRIS MCLAUGHLIN
University of Pennsylvania Department of Biology: Ecology and Evolutionary
Biology Graduate Group Ph.D. Candidate, 2007 to present |
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DAVID
C. RICHARDSON
University of Maryland Marine, Estuarine and Environmental Science Department Ph.D. Candidate, 2002 to present
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Education:
BS in Operations Research and Industrial Engineering,
Cornell University, 2002
Seston is suspended particulate load in streams and consists of different types
of small particles (<1mm) including bacterial and algal cells, leaf and wood
pieces, fecal pellets, insect parts and soil particles. I am interested in how
small suspended particles (seston) move downstream and how they interact
physically and biologically with the stream ecosystem. Specifically, my
dissertation work examines the seasonal and daily transport patterns of seston
and identifies potential sources of seston. I would like to compare storm and
baseflow transport dynamics of particles using models and empirical
observations. I have also been developing a method to examine the bacterial
respiration of seston carbon.
E-mail: drichar4@umd.edu
Website
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